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  • Ferrari U., Deny S., Chalk M., Tkacik G., Marre O.*, Mora T.* (2018) Separating intrinsic interactions from extrinsic correlations in a network of sensory neurons Biorxiv: 243816. [PDF]
  • Gardella C., Marre O., Mora T. (2018). Modeling the correlated activity of neural populations: A review. Neural Computation, in press. [Arxiv] [PDF]
  • Ferrari U., Deny S., Marre O.*, Mora T.* (2018). A simple model for low variability in neural spike trains. Neural Computation, Aug 27:1-28. [Biorxiv] [PDF] [Code]
  • Nghiem T.A., Telenczuk B., Marre O., Destexhe A.*, Ferrari U.* (2018). Maximum entropy models reveal the correlation structure in cortical neural activity during wakefulness and sleep. Physical Review E, 98, 012402. [PDF]
  • Botella-Soler V, Deny S, Martius G, Marre O, Tkacik G (2018). Nonlinear decoding of a complex movie from the mammalian retina. PloS Computational Biology, 14(5): e1006057. [PDF] [Data] [Biomedical picture of the day]
  • Yger P*, Spampinato GLB*, Esposito E*, Lefebvre B, Deny S, Gardella C, Stimberg M, Jetter F, Zeck G, Picaud S, Duebel J, Marre O (2018). Fast and accurate spike sorting in vitro and in vivo for up to thousands of electrodes eLife : Mar 20;7. pii: e34518 [PDF] [Software][Data]
  • Gardella C., Marre O.*, Mora T.* (2018). Blindfold learning of an accurate neural metric. PNAS: Mar 12. pii: 201718710 [PDF] [Code] [Data]
  • Ferrari U#, Gardella C#, Marre O*, Mora T* (2018). Closed-loop estimation of retinal network sensitivity reveals signature of efficient coding. eNeuro, Jan 23;4(6). [PDF][Data]
  • Chalk M, Marre O, Tkacik G (2017). Towards a unified theory of efficient, predictive and sparse coding. PNASJan 2;115(1):186-191. [PDF]
  • Deny S, Ferrari U, Mace E, Yger P, Caplette R, Picaud S, Tkacik G, Marre O (2017). Multiplexed computations in retinal ganglion cells of a single type. Nature Communications, 8: 1964.[PDF]
  • Chaffiol A, Caplette R, Jaillard C, Brazhnikova E, Desrosiers M, Dubus E, Duhamel L, Macé E, Marre O, Benoit P, Hantraye P, Bemelmans AP, Bamberg E, Duebel J, Sahel JA, Picaud S, Dalkara D (2017). A New Promoter Allows Optogenetic Vision Restoration with Enhanced Sensitivity in Macaque Retina. Molecular Therapy. Jul 20. pii: S1525-0016(17)30326-X.
  • Sengupta A, Chaffiol A, Macé E, Caplette R, Desrosiers M, Lampic M, Forster V, Marre O, Lin JY, Sahel JA, Picaud S, Dalkara D, Duebel J (2016). Red-shifted channelrhodopsin stimulation restores light responses in blind mice, macaque retina, and human retina. EMBO Mol Med. Nov 2;8(11):1248-1264.
  • Lefebvre B*, Yger P*, Marre O (2016). Recent progress in multi-electrode spike sorting methods Journal of Physiology Paris, Nov;110(4 Pt A):327-335. Biorxiv: 086991 [PDF]
  • Prentice JS, Marre O, Ioffe ML, Loback AR, Tkacik G, Berry MJ II (2016). Error-Robust Modes of the Retinal Population Code PLoS Comput Biol 12(11): e1005148. [PDF]
  • Chalk M, Marre O, Tkacik G (2016). Relevant sparse codes with variational information bottleneck Neural Information Processing Systems. [arXiv] [PDF]
  • Gardella C, Marre O, Mora T (2016). A tractable method for describing complex couplings between neurons and population rate eNeuro Aug 18;3(4). [arXiv] [PDF]
  • Tkacik G, Mora T, Marre O, Amodei D, Palmer SE, Berry MJ 2nd, Bialek W (2015). Thermodynamics and signatures of criticality in a network of neurons. PNAS. Sep 15;112(37):11508-13. arXiv: 1407.5946 [q-bio.NC] [PDF]
  • Marre, O., Tkacik, G., Simmons, K., Mora, T., Berry, M.J. (2015) Precise decoding of dynamical motion from a large retinal population. PloS Computational Biology, Jul 1;11(7):e1004304. arXiv: 1408.3028 [q-bio.NC] [PDF]
  • Palmer, S.E., Marre, O., Berry II, M.J., Bialek, W. (2015). Predictive information in a sensory population PNAS, Jun 2;112(22):6908-13. arXiv: 1307.0225 [q-bio.NC] [PDF]
  • Akolkar, H., Meyer, C., Clady, X., Marre, O., Bartolozzi, C., Panzeri,S., Benosman, R. (2015). What can asynchronous event-based acquisition add to pattern recognition?. Neural Computation, 27 561-593 [PDF]
  • Mora, T., Deny, S., Marre O. (2015). Dynamical criticality in the collective activity of a population of retinal neurons. Physical Review Letters, 114, 078105. arXiv: 1410.6769 [q-bio.NC] [PDF]
  • Macé, E.*, Caplette, R.*, Marre, O.*, Sengupta, A., Chaffiol, A., Barbe, P., Desrosiers, M., Bamberg, E., Sahel, J.A, Picaud, S., Duebel, J., Dalkara, D. (2014). Targeting channelrhodopsin-2 to ON-bipolar cells with vitreally administered AAV restores ON and OFF visual responses in blind mice. Molecular Therapy, Jan;23(1):7-16. [PDF] [Supplementary]
  • Fournier, J., Monier, C., Levy, M., Marre, O., Sari, K., Kisvarday, Z., Frégnac, Y (2014). Complexity of synaptic receptive fields in cat primary visual cortex. Journal of Neuroscience, Apr 16;34(16):5515-28. [PDF]
  • Tkacik, G., Marre, O., Amodei, D., Schneidman, E., Bialek, W, Berry M.J., (2014). Searching for collective behaviour in a network of real neurons. PloS Computational Biology Jan;10(1):e1003408 [PDF]
  • Baudot, P.*, Levy, M.*, Marre, O.*, Monier, C.*, Pananceau, M., Frégnac, Y (2013). Animation of Natural Scene by virtual eye movements evoke low noise and high precision in V1 neurons. Frontiers in Neural Circuits. 27 December. [PDF]
  • Rajan, K., Marre, O., Tkacik, G (2013). Learning quadratic receptive fields from neural responses to natural signals. Neural Computation, Jul;25(7):1661-92. [PDF]
  • Berry, M.J., Tkacik, G., Dubuis, J., Marre, O., da Silveira, R (2013). A simple method for estimating entropy from the neural activity. Journal of Statistical Mechanics, P03015. [PDF]
  • Tkacik, G., Marre, O., Mora, T., Amodei, D., Berry M.J., Bialek, W (2013). The simplest maximum entropy model for collective behavior in a neural network. Journal of Statistical mechanics, P03011. [PDF]
  • Nasser, H., Marre, O., Cessac, B. (2013). Spatio-temporal spike trains analysis for large-scale networks using the maximum entropy principle and a Monte-Carlo method. Journal of Statistical Mechanics, P03006. [PDF]
  • Marre, O., Destexhe, A. (2013). Exploring the neural manifold. Physics, 6 (11). [PDF] (Comment on Tkacik et al, 2013).
  • Chen, E., Marre, O., Fisher, C., Schwartz, G., Levy, J., da Silveira, R., Berry, M.J. (2013). Alert Response to Motion Onset in the Retina. Journal of Neuroscience, 2 ; 33 (1):120-32. [PDF]
  • Lorach, H., Marre, O., Sahel, J.A., Benosman, R., Picaud, S (2012). Neural stimulation for visual rehabilitation: advances and Challenges. J. Physiol. Paris, Nov 10. [PDF]
  • Marre, O.*, Amodei, D.*, Deshmukh, N., Sadeghi, K., Soo, F., Holy, T., Berry, M.J. (2012). Recording of a large and complete population in the retina. Journal of Neuroscience, 32 (43):14859-14873. [PDF]
  • Lorach, H., Benosman, R., Marre, O., Ieng, S.H., Sahel, J.A., Picaud, S (2012). Artificial retina: the multichannel processing of the mammalian retina achieved with a neuromorphic asynchronous light acquisition device. Journal of Neural Engineering, 9, 066004. [PDF]
  • Vasquez, JC, Marre, O., Palacios, A.G., Berry, M.J., Cessac, B. (2012). Gibbs distribution analysis of temporal correlation structure on spike trains from retina ganglion cells, J. Physiol. Paris, 106 (3-4): 120-7. [PDF]
  • Chavane F, Sharon D, Jancke D, Marre O, Frégnac Y and Grinvald A (2011). Lateral spread of orientation selectivity in V1 is controlled by intracortical cooperativity. Front. Syst. Neurosci. 5:4. [PDF]
  • Frégnac Y, Pananceau M, René A, Huguet N, Marre O, Levy M and Shulz DE (2010) A re-examination of Hebbian-covariance rules and spike timing-dependent plasticity in cat visual cortex in vivo. Front. Syn. Neurosci. 2:147. [PDF]
  • Fregnac Y, Baudot P, Chavane F, Marre O, Monier C, Pananceau M, Sadoc G. (2009). Multiscale functional imaging: reconstructing network dynamics from the synaptic echoes recorded in a single visual cortex neuron. Bull Acad Natl Med. Apr;193(4):851-62

  • Marre O*, Yger P*, Davison AP, Frégnac Y. (2009) Reliable recall of spontaneous activity patterns in cortical networks. Journal of Neuroscience. Nov 18 ; 29(46):14596-606. [PDF]
  • El Boustani S*, Marre O*, Béhuret S, Baudot P, Yger P, Bal T, Destexhe A, Frégnac Y. (2009) Network-state modulation of power-law frequency-scaling in visual cortical neurons. PLoS Comput Biol. Sep ; 5(9):e1000519. [PDF]
  • Marre, O.*, El Boustani, S.*, Frégnac, Y., and Destexhe, A. (2009) Prediction of spatio-temporal patterns of neural activity from pairwise correlations, Physical Review Letters, 102:138101. [PDF]

*,#: equal contributors